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Gencove Docs

Gencove Base
Gencove Base
- Getting Started
- Analysis
  Analysis
  - Upload files
    Upload files
    
    FASTQs
    
    CRAMs
    
    Listing uploads
    
    Uploading using the CLI
    
    Uploading using S3
    
    Uploading using BaseSpace
  - Projects
    Projects
    
    Introduction
    
    Creating projects
    
    Data analysis configuration
    
    Hiding projects
    
    Listing projects
    
    Listing pipeline capabilities
    
    Listing pipelines
    
    Deleting projects
    
    Sharing projects
  - Samples
    Samples
    
    Introduction
    
    Hiding samples
    
    Listing samples
    
    Downloading deliverables
    
    Sample metadata and files
    
    Importing existing samples to another project
    
    Copying existing samples to another project
    
    Canceling samples
    
    Deleting samples
  - Reference Genome
  - Merged VCF file
  - Backwards-compatible array deliverables
  - Retrieving reports
  - Project sample manifests
  - Event Notifications
  - The Gencove Archive
- Permissions
- Billing
- DTC Partner Integration
  DTC Partner Integration
- API Reference
- CLI Reference
- Base FAQ
Gencove Explorer
Gencove Explorer
- Introduction
- Demo notebooks
- Running analyses
- Storage
- Querying
- Shortcuts
  Shortcuts
- Installing packages and software
- Instance management
- SDK Reference
- Explorer FAQ
General
General

API Reference¶

The full API reference for publicly available endpoints is available here: API reference

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