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IGV

IGV

This shortcut is a version of the Integrative Genomics Viewer (IGV) integrated into the broader Gencove platform, making it easy to visually observe various aspects of a sample like BAM file read coverage relative to the reference genome.

from gencove_explorer_library.shortcuts.igv import IGV
IGV().run(
    sample="c721a787-3550-4f2c-8324-97ba4686ef4c",
    region="chr2:56,804,074-56,811,712",
)