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Creating projects

Creating projects

To create a project via CLI, use gencove projects create command. It requires a project name and a pipeline-capability-id.

$ gencove projects create my-project-name pipeline-capability-id

The way to acquire pipeline-capability-id is explained in the sections below.

Creating projects with custom modifications

To create a project with custom modifications via the Web Dashboard follow this instructions:

  • Select "My Projects" on the left panel.
  • Then on the right below your username click the "Add new project" button.
  • Set a project name and description.
  • Select one of the available configurations.
  • In the configuration description toggle the "Advanced configuration" menu. Change the configurations as needed:
    • Soft QC: Continue analysis even when intermediate QC tests have failed. Note that failed samples will be charged the same amount as successful samples.
    • Leave-one-out analysis: Check concordance against the reference panel.
    • Downsample to max coverage: Automatically downsamples input to fit the maximum allowed coverage.
  • Scroll down to the end and click on "Add new project".

After completing the previous steps, the Project is now created and samples can be added to it and sent for analysis.